Index

C

calculate_freq_ctrls() (in module manamodeller.dars) calculate_frequencies() (in module manamodeller.dars) calculate_frequencies_for_dir() (in module manamodeller.dars)

compute_scores() (in module manamodeller.dars) concatenate_csv() (in module manamodeller.results_processing) concatenate_reaction_div_enum() (in module manamodeller.results_processing) concatenate_solutions() (in module manamodeller.results_processing)

D

dendro_reactions() (in module manamodeller.results_analysis)

E

eval_gpr_activity() (in module manamodeller.modelling)

extract_reactions_from_clusters() (in module manamodeller.results_analysis)

F

find_high_low_exprs() (in module manamodeller.modelling) find_reactions_expression_levels() (in module manamodeller.modelling)

findCircleCenter() (in module manamodeller.dars) fullname_equation() (in module manamodeller.modelling)

G

generate_annotation_table() (in module manamodeller.results_analysis) get_gene_list() (in module manamodeller.modelling)

get_GPR_reactions() (in module manamodeller.modelling) get_node_list() (in module manamodeller.results_analysis) get_reactions_ids() (in module manamodeller.modelling)

I

identify_model_gene_ids() (in module manamodeller.modelling)

L

launch_multi_proc() (in module manamodeller.utils)

M

make_csvs() (in module manamodeller.utils) make_pickle() (in module manamodeller.utils) manamodeller module manamodeller.batchs module manamodeller.dars module manamodeller.modelling module manamodeller.results_analysis module

manamodeller.results_processing module manamodeller.utils module map_single_column() (in module manamodeller.modelling) module manamodeller manamodeller.batchs manamodeller.dars manamodeller.modelling manamodeller.results_analysis manamodeller.results_processing manamodeller.utils

P

preprocess_data() (in module manamodeller.modelling)

R

remove_done_batchs() (in module manamodeller.results_processing) remove_zerobiomass_solutions() (in module manamodeller.results_processing)

rescale_and_rotate() (in module manamodeller.dars) rotate() (in module manamodeller.dars)

V

visualize_gml() (in module manamodeller.results_analysis)

W

worker() (in module manamodeller.utils)

write_div_enum_script() (in module manamodeller.batchs) write_rxn_enum_script() (in module manamodeller.batchs)